Here are a few details of the choices that presented for installation.
A MAC address will be shown for both en0 and en1 and likely labelled as 'ether'. On systems with just a wireless connection, en0 will be your wireless interface. The MAC address for en0 will. Explore the world of Mac. Check out MacBook Pro, MacBook Air, iMac, Mac mini, and more. Visit the Apple site to learn, buy, and get support.
The command line tools are mostly necessary for compiling some Rpackages from source (gcc etc.). But that mostly happens behind thescenes so you won't have to deal directly with any of that.
The usual way of installing this is typing this in the terminal:
This is desktop manager needed to run X11 programs, such as afni.
During the install you may notice the xquartz installer drivebriefly mount and unmount.
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No. Not beer, but a package manager for macOS. It is used to installnetpbm which has functionality for converting image formats (such asto PNG) and is used in several programs like @snapshot_volreg,@chauffeur_afni and others. Financial literacy mac os.
Also installs openmpi for multiprocessor support in R.
This is what is usual the catch phrase of pirates on the highseas. But here we are talking about the free software environment forstatistical computing and graphics. afni needs this for several of thegroup analysis programs.
The version installed with this app is version 3.6.3 (Holding the Windsock)released on 2020-02-29.
The CRAN mirror is https://cloud.r-project.org so it shouldautomatically choose a mirror close to your geographical location.
AFNI is a set of C programs for processing, analyzing, and displayingfunctional MRI (FMRI) data. (taken from the about page…)
A few thing are happening here.
Basically running
@update.afni.binaries. It will default toinstalling in~/abin, but you can choose your own favoritefolder.Updates your
~/.cshrc,~/.bashrc,~/.bash_profile,~/.zshrc,and other environments.Installs the R packages necessary for afni. First it checks to makesure you have R and Homebrew's openmpiinstalled.
rPkgsInstall-pkgsALLmay fail without those…
Runs afni_system_check.py-check_all.
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If you selected afni_system_check (which you should do…),you will be presented with a dialog to let you view it before you procede.
The afni_system_check output will have been saved to your desktop. Itis named something obvious like'afni_system_check.20190208-145815.txt'. Clicking 'View' will openthe file in your default text editor. This file may be useful forfiguring out problems with the install, especially when posting to themessage board.
Note
When you are finished with installation, you may want toopen up the AFNI and SUMA GUIs, juuuust to make sure all iswell:
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Download class data and prep it for bootcamps or your own practice.
You may want to do the following later:
Read+practice with the handy Unix documentation/tutorial.
Purpose: give you a quick lesson/refresher on using basic Linuxshell commands (e.g., ls, cd, less, etc.). It will greatlyenhance your bootcamp experience– we promise!
Pro tip: If you will be attending a Bootcamp, you might want tobring a mouse to use with your laptop. It will be easier to followthe demos using a mouse than a trackpad. (eh…)
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Install optional packages for some of afni's shiny integrations.You can learn more about shiny apps here.
Runs:
This is needed if you want to run any of these programs:
