Race Tests 001 Mac OS

• Race Tests 001 Mac Os Version
• Race Tests 001 Mac Os Catalina

Please refer to this site/make edits here for the most updated information: https://partnershealthcare.sharepoint.com/sites/LCN/SitePages/FS-Version-5.3.aspx

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Internal FreeSurfer

People within the MGH/MIT/HMS Martinos Center should use the Internal FreeSurfer Distributions because FreeSurfer is already installed on your system.

Contents

1. FreeSurfer Download and Install

FreeSurfer System Requirements

Summary of Requirements:
Operating System: Linux, Mac OS X, Windows (via VirtualBox)
Processor Speed: 2GHz at least
RAM: 8GB recommended
Graphics card: 3D graphics card with its own graphics memory & accelerated OpenGL drivers
Size of installation package: 8.5GB
Typical size of a processed subject: 370MB
Tutorial dataset size: 18GB
Other requirements: Matlab (only needed to run FS-FAST, the fMRI analysis stream)

Download

ANNOUNCING THE RELEASE OF FREESURFER v6-BETA. LOOKING FOR BETA TESTERS.

Freesurfer 5.3ReleaseNotes

Important Note: It is essential to process all your subjects with the same version of FreeSurfer, on the same OS platform and vendor, and to be completely safe, even the same version of the OS.

Important Note for Mac OS X users: Mac OS X platform requires the installation of XQuartz for freesurfer to work properly. OSX versions 10.6 - 10.9 require XQuartz 2.7.5. OSX versions 10.10 and higher require XQuartz 2.7.6.

Race Tests 001 Mac Os Version

Development Version: Daily builds of FreeSurfer can be downloaded from here.

Previous Releases: Old releases of FreeSurfer can be downloaded from here.

Installation

Linux: Installing FreeSurfer on Linux systems involves simply extracting the contents of the .tar.gz file somewhere on your machine. Installing into the directory /usr/local is recommended. For example:

Mac: Installing FreeSurfer on Mac systems involves simply double clicking the .dmg file and clicking thru the steps. The default installation location is in the /Applications Walker (itch) (dogcatsprings) mac os. directory. For more detailed instructions, please see the following step-by-step.

Setup & Configuration

To begin using FreeSurfer, you need to open a terminal window and define and environment variable called FREESURFER_HOME which is set to the location FreeSurfer was installed, and then source the setup script. Sourcing FreeSurfer needs to be done every time you open a new terminal window. Or, you can add the two lines below to your default setup file (.bashrc or .cshrc) and FreeSurfer will be sourced automatically everytime you open a new window.

Linux:

Mac:

If done correctly, you should see output similar to this:

Freesurfer 5.3ReleaseNotes

Important Note: It is essential to process all your subjects with the same version of FreeSurfer, on the same OS platform and vendor, and to be completely safe, even the same version of the OS.

Important Note for Mac OS X users: Mac OS X platform requires the installation of XQuartz for freesurfer to work properly. OSX versions 10.6 - 10.9 require XQuartz 2.7.5. OSX versions 10.10 and higher require XQuartz 2.7.6.

Race Tests 001 Mac Os Version

Development Version: Daily builds of FreeSurfer can be downloaded from here.

Previous Releases: Old releases of FreeSurfer can be downloaded from here.

Installation

Linux: Installing FreeSurfer on Linux systems involves simply extracting the contents of the .tar.gz file somewhere on your machine. Installing into the directory /usr/local is recommended. For example:

Mac: Installing FreeSurfer on Mac systems involves simply double clicking the .dmg file and clicking thru the steps. The default installation location is in the /Applications Walker (itch) (dogcatsprings) mac os. directory. For more detailed instructions, please see the following step-by-step.

Setup & Configuration

To begin using FreeSurfer, you need to open a terminal window and define and environment variable called FREESURFER_HOME which is set to the location FreeSurfer was installed, and then source the setup script. Sourcing FreeSurfer needs to be done every time you open a new terminal window. Or, you can add the two lines below to your default setup file (.bashrc or .cshrc) and FreeSurfer will be sourced automatically everytime you open a new window.

Linux:

Mac:

If done correctly, you should see output similar to this:

License

Race Tests 001 Mac Os Catalina

A license key must be obtained to make the FreeSurfer tools operational. Obtaining a license is free and comes in the form of a license.txt file. Once you obtain the license.txt key file, copy it to your FreeSurfer installation directory. This is also the location defined by the FREESURFER_HOME environment variable.

Follow this link to obtain a license key.

Test your FreeSurfer Installation

FreeSurfer comes with two sample data files (sample-001.mgz and sample-002.mgz) as well as a fully recon-ed subject named bert. These data files can be used to test that your FreeSurfer installation was done properly. To test your installation, please try the following examples:

Example 1: Convert the sample-001.mgz to nifti format.

Example 2: View the output volumes, surfaces and subcortical segmentation of fully recon-ed subject bert.

The freeview above command will open the freeview GUI and should look similar to the image below.

Additional Resources

Try our tutorials

Sign up for a FreeSurfer course

Join the FreeSurfer mailing list, ask a question, or view the archives